SE2850219

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9224
  • Sorghum bicolor
  • SE2850219
  • PIF/harbinger
  • To1
  • chromosome_3:64440665-64440910
  • TAA
  • TAAGGCCTTGTTTAGATAAAAATTTTTGGATT

Secondary structure and sequence

TSD    TIR
5'



3' 
                ------------A           --     TTGA      A    TTTCGTTTTTATTTGACAAACATTGTCCAATCATAGAGCAACTAGACTTAAAAGATTCGTCTCGCGATTTA
 TAAGGCCTTGTTTAG             TAAAAATTTTT  GGATT    CACTGT GCAC                                                                       
 |||||||||||||||             |||||||||||  |||||    |||||| ||||                                                                        
 ATTCCGGAACAAATC             GTTTTTGAAAA  TCTAA    GTGACA GTGT                                                                       
A               AAGTGGGTTTTTG           GT     ----      -    AGTTTAGAACGCCGTGTACGTATCTCGTAATTTATATTTACTTTTATTTTTGATTAATGTGTCAAACAGAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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