Plant MITE

SE2850221

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9226
Sorghum bicolor
SE2850221
PIF/harbinger
To38
chromosome_9:46048548-46048848
TTA
AGGCCAGTCTCAGTGGAGAGTTTCATG

Secondary structure and sequence

TSD TIR

5'

3'

TT       T        A          GCGTT     ----CAA   TGCCATGTCATATGAAATAAAATGAAACTTGAATGAAACACCCACTCTCAATGGAGAGTTTCATTTCATAGTTTCATAAGCATTTAATTCCAAGACTCATAGAAA
  AGGCCAG CTCAGTGG GAGTTTCATG     GTTTC       GAC                                                                                                         
  ||||||| |||||||| ||||||||||     |||||       |||                                                                                                          
  TCCGGTC GAGTTACC CTCAAAGTAC     CAAAG       AAT                                                                                                         
AT       T        -          --ACT     TAAACGT   TTATCCAACGGTGTATTCGATAAAACTACTGTACCGTCACATAAATTCTTCTCTCTCTTCTTTACACAAAGTAGATCTATTTTAAGAGAACCGTGCTAATGGTTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850221

TTAGGCCAGTCTCAGTGGAGAGTTTCATGGCGTTGTTTCCAAGACTGCCATGTCATATGAAATAAAATGAAACTTGAATGAAACACCCACTCTCAATGGAGAGTTTCATTTCATAGTTTCATAAGCATTTAATTCCAAGACTCATAGAAAGTTGGTAATCGTGCCAAGAGAATTTTATCTAGATGAAACACATTTCTTCTCTCTCTTCTTAAATACACTGCCATGTCATCAAAATAGCTTATGTGGCAACCTATTTAATGCAAATGAAACTCACATGAAACTCCCATTGAGTCTGGCCTTA

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