SE2850222

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9227
  • Sorghum bicolor
  • SE2850222
  • PIF/harbinger
  • To1
  • chromosome_5:2916778-2917015
  • TAA
  • AGGCCTTGTTTAGTTCTCAAAATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               -CTC                 CCCGTCACATCGAATCTTGCGGCACATGCATGAAGCATTAAATATAGACGAAAACAAAAACTAATTACGCAGTTTACCTGT
  AGGCCTTGTTTAGTT    AAAATTTTCCAAGATTC                                                                                 
  |||||||||||||||    |||||||||||||||||                                                                                 A
  TCCGGAACAAATCAA    TTTTAAAAACCTAAAGC                                                                                 
AA               ACCC                 GATGACATCGTGAAAGCAAACAAACACCGTTTATAATAGGTTAGTATCTGATTGATCCTAGTTTTCTAAGCAGAGTGCTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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