SE2810225

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9230
  • Sorghum bicolor
  • SE2810225
  • Tc1/Mariner
  • St7
  • chromosome_9:9057262-9057525
  • TA
  • TACTCCCTCCATACTCATAAAACAAGTCGTTTTGAACAA

Secondary structure and sequence

TSD    TIR
5'



3' 
                                  A    -------T      -------- T - CCAAAGTCTAACTTTCGCTTTTTATTTTTATAAAAATATTTATCAAAAAGTGGTATAGATATATTTTTATGAAA
TACTCCCTCCATACTCATAAAACAAGTCGTTTTG ACAA        GGCGTG        G C T                                                                          
|||||||||||||||||||||||||||||||||| ||||        ||||||        | | |                                                                          G
ATGAGGGAGGTATGGGTATTTTGTTCAGCAAAAC TGTT        AGTTTG        A T T                                                                          
                                  C    CTAAACTC      TAACCCTT - A TTAGTAATTATTGAAAATTCAACAACTCAAACTTTTATATTTTTGGTATACTTATCTAAACAGAATTTTTTTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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