SE2850226

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9231
  • Sorghum bicolor
  • SE2850226
  • PIF/harbinger
  • To39
  • chromosome_2:20455133-20455610
  • TAA
  • AGAGCATCTCCAAGAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                AT  -    AA ---          G  CATTTTAGAGTTTAAGCAGCAAAAATGATGCTCCAACAGCTATTGTATCCCTGTTTCTAAATTGGCTAGCTAGCCATCCCATGCTTTTCGGTGGCCATAAAAAGCAAGCCTGCTCGCTCGCTATTCTCCGATTTTCCGTCTGTGGTTGCATGTTCCCGCATACACGAGCTCCCCGTCGATCTGGTAGCGAGGCCTTT
  AGAGCATCTCCAAGAG  GT GTTA  T   TTGTTTTAGA TT                                                                                                                                                                                                     
  ||||||||||||||||  || ||||  |   |||||||||| ||                                                                                                                                                                                                     G
  TCTCGTAGAGGTTCTC  GA AAGA  T   TGTTATCGGT TT                                                                                                                                                                                                     
AA                --  C    -- TTT          -  AGGATATAAAATCGATAATACATTTTATCTTTTCAAGATTTTTTCTATATAATAAGGTTGTCGAATCGATAAAAAAACAAATATATATATAAATTGTTACGGTGCAACTGTGTGTCCACTAACTTTGAAGTTGGCTAGCTGTAGGGAAGCACCGACAATAATAAAAACGCGGGTGGTGGTACGGGCTAGTCTGCCTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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