SE2820230

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9235
  • Sorghum bicolor
  • SE2820230
  • Mutator
  • M6
  • chromosome_1:45695377-45695928
  • TTTTTTAAA
  • AAAGAGTAAAATACACCGGCGGCCCTTTAAGTTGTCGCCCTGTGCCACTTTGGTCCATGAACTTGCAAACGCGAAAAAGAGGCCCCTAAACTTGTCAGCATGTGCCACTTTGGTCCATGAACTTGCAAACGCGAAAAAGTACCCTCTGAACTTGTCGACGTGTGCCACTTTGC

Secondary structure and sequence

TSD    TIR
5'



3'
TTTTTT                C             G      C                 C              G        A       A        AG A               C                    A   AC               A G       CTT   T        ATGCAAATACGAAAATAACAC       -------   GCACTGTTCTGCCACGTGGCCGCCTCTGGTAGGCCATGCATGGCACCGTTTATGGTGCTGACGTC
      AAAGAGTAAAATACAC GGCGGCCCTTTAA TTGTCG CCTGTGCCACTTTGGTC ATGAACTTGCAAAC CGAAAAAG GGCCCCT AACTTGTC  C TGTGCCACTTTGGTC ATGAACTTGCAAACGCGAAA AGT  CCTCTGAACTTGTCG C TGTGCCA   TGC CCATGAAC                     CGGCTGC       GTG                                                                 
      |||||||||||||||| ||||||||||||| |||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||| ||||||||  | ||||||||||||||| |||||||||||||||||||| |||  ||||||||||||||| | |||||||   ||| ||||||||                     |||||||       |||                                                                  
      TTTCTCATTTTATGTG CCGCCGGGAAATT AACAGT GGACACGGTGAAACCAG TACTTGAACGTTTG GCTTTTTC CTGGGGA TTGAACAG  G ACACGGTGAAACCAG TACTTGAACGTTTGCGTTTT TCA  GGGGACTTGAACAGC G ACACGGT   ACG TGCTTAAC                     TATATAA       TAT                                                                 
AAATTT                A             G      C                 A              G        A       C        GA G               A                    G   CC               C G       --T   T        ---------------------       TAAACTA   AAACTGCGATGCTTATTTTTATATAGTTAAAGCATTTAATTTTTTCTTAACGACTGTAGTAACGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End