SE2810232

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9237
  • Sorghum bicolor
  • SE2810232
  • Tc1/Mariner
  • St18
  • chromosome_8:1413880-1414140
  • TA
  • TACTCCATTCGTCTCAAAAAGAATGTAAATCTCACTTCCTGAAAAGTCAAAAGATATTTAAATTTGACCAAGTTTA

Secondary structure and sequence

TSD    TIR
5'



3'
    -  A     C  A            A    A T   T  A        A   A     A           T  --------------    - GATATTATACACAGTTAGATCTCTAATTAAGTTTATTATGAAA
TACT CC TTCGT TC AAAAGAATGTAA TCTC C TCC GA AAGTCAAA GAT TTTAA TTTGACCAAGT TA              TATA A                                           
|||| || ||||| || |||||||||||| |||| | ||| || |||||||| ||| ||||| ||||||||||| ||              |||| |                                            
ATGA GG AGGCA AG TTTTCTTACGTT AGAG G AGG TT TTCAGTTT CTA GAATT AAACTGGTTTA AT              CTGT A                                           
    T  -     -  G            A    C T   T  C        -   A     A           T  TAAATTTTTCATAA    A ATATTACACATTATTCATAGTAATCTAATCAGTAATTTATATA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End