SE2820235

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9240
  • Sorghum bicolor
  • SE2820235
  • Mutator
  • M7
  • chromosome_5:10087240-10087706
  • TTTATATTT
  • ATATTTGGGG

Secondary structure and sequence

TSD    TIR
5'



3'
TTT    TT    -CATT                       C CG    A    A                                                                                                  G                                                                         CCTTAACA
   ATAT  GGGG     TGGCTACCGGACATGCAAAGTGG G  CATT GCTG AAGACACTTTTTCATGTAACACTCACCACCAAAACAGTTGCCATTTGTAAACCATAAGGCCAATGGCTATGAAATTTTAACAGCAACAAGATATGATA TTATCTACAAATCATCTAATACTCACTTCCATAGAAAATCTTGTTAAGGACATGAAATCATGTCCACCAGCAA        
   ||||  ||||     ||||||||||||||||||||||| |  |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
   TATA  TCCC     ACCGATGGCCTGTACGTTTCACC C  GTAA CGAC TTCTGTGAAAAAGTACATTGTGAGTGGTGGTTTTGTTAACGGTAAACATTTGGTATTCCGGTTGCCGATACTTTAAAATTGTCGTTGTTCTATGCTAT AATAGATGTTTAGTAGATTATGAGTGAAGGTATCTTTTAGAGCAATTCCTGTGCTTTAGTACAGGTGGTCGTT        
 TT    TT    TTTTT                       A TG    -    C                                                                                                  A                                                                         TAGTACCG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End