SE2850237

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9242
  • Sorghum bicolor
  • SE2850237
  • PIF/harbinger
  • To13
  • chromosome_1:20367896-20368180
  • TTA
  • AGAGCAACTCCAAGAGCTTGGCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                        -----TTC    TG    GGCTATTTTAAAATTTACATAGTAGAAAGTAGGCTCCAACAAATGTGCTATCTGGTTTTGTAAAATAGAAAGTTGGCTATCCCTTGTTTTTCGGTGGCCATA
  AGAGCAACTCCAAGAGCTTGGCTA        TTGT  TGGA                                                                                                      
  ||||||||||||||||||||||||        ||||  ||||                                                                                                       
  TCTCGTTGAGGTTCTCGAATCGAT        TCGG  TTTA                                                                                                      
AT                        TTCAATCA    --    AAGTAATAAACCGGTAAAACATTTTATATTTTGAAGAATTTATTCTTCAGGTGTCTTCAGAACGATAAAATGTTTTAGTCTATCGGTCACACCAACCGATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3