SE2810239

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9244
  • Sorghum bicolor
  • SE2810239
  • Tc1/Mariner
  • St14
  • chromosome_9:48415076-48415336
  • N.A.
  • TACTCCCTCCGTTCTTTTTTACATGTTGTATTAGGTTTGTCCTAAGTCAAACATTTGTATCTTTGGCCATCGATATAAAAAAACTATATAGATTCACGGCATAAGATTTATTTTTTAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
           G                       GT                   TG   C          G  A       --A  A     A           -AG      TTT   -  TTCACTATA
 TACTCCCTCC TTCTTTTTTACATGTTGTATTAG  TTGTCCTAAGTCAAACATT  TAT TTTGGCCATC AT TAAAAAA   CT TATAG TTCACGGCATA   ATTTAT   TTA GA         
 |||||||||| |||||||||||||||||||||||  |||||||||||||||||||  ||| |||||||||| || |||||||   || ||||| |||||||||||   ||||||   ||| ||         A
 ATGAGGGAGG AAGAAAAAATGTACAGTGTAATC  AACGGGATTCAGTTTGTAA  ATG AAACTGGTAG TA ATTTTTT   GA ATATT AAGTGTTGTAT   TAAATG   AAT CT         
G          A                       AG                   TA   A          G  A       AAA  -     A           AAA      TAT   A  TTCATAAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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