Plant MITE

SE2850241

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9246
Sorghum bicolor
SE2850241
PIF/harbinger
To23
chromosome_3:52200971-52201267
TTA
AGGGGGTATTTAGTTCC

Secondary structure and sequence

TSD TIR

5'

3'

TT       A         AAAAA   ---      CCAACTACTTTGGAATGGTGGAATGCAAAATGCCAAAATTTTCAGGGTCATCTTTAGTTCCATCCAAAATGCAGAATTTATTGCCCTCATGAGGGCCTCATGAGACTCTTTTGGG
  AGGGGGT TTTAGTTCC     TGC   AAAATG                                                                                                                   
  ||||||| |||||||||     |||   ||||||                                                                                                                   T
  TCCCCCA AAATCAAGG     TGG   AGGTTT                                                                                                                   
AT       C         ---AG   ATA      TTTAAAACTTAAAACCAAGTAGTAAAACGTTTTACGTTGATTTGTGGTACGTTTTTAAAACCGTTTTCTACCAATAAGAGGTAAAACCTAAAACCGGAGTTCTCCGTTTTTTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850241

TTAGGGGGTATTTAGTTCCAAAAATGCAAAATGCCAACTACTTTGGAATGGTGGAATGCAAAATGCCAAAATTTTCAGGGTCATCTTTAGTTCCATCCAAAATGCAGAATTTATTGCCCTCATGAGGGCCTCATGAGACTCTTTTGGGTTTTTTTTTTGCCTCTTGAGGCCAAAATCCAAAATGGAGAATAACCATCTTTTGCCAAAATTTTTGCATGGTGTTTAGTTGCATTTTGCAAAATGATGAACCAAAATTCAAAATTTTTTGGAATAGGTGAGGAACTAAACACCCCCTTA

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