SE2850245

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9250
  • Sorghum bicolor
  • SE2850245
  • PIF/harbinger
  • To4
  • chromosome_2:444605-444862
  • TAA
  • AGGCCTTGTTTAGTTCCAAAAATTTTTGCAAAATGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA          T     C     TT        ------AT  -ACAC       ATT   TTTGTATTTGATAAATATTATCCAATCATGGATTAAGTAGACTCTAAAGATTCGTCTCGCAAATTACGGGTA
  AGGCCTTGTT AGTTC AAAAA  TTTGCAAA        GA     TGTAGCA   TCA                                                                        
  |||||||||| ||||| |||||  ||||||||        ||     |||||||   |||                                                                        A
  TCCGGAACAA TCAAG TTTTT  AAATGTTT        CT     ACATTGT   AGC                                                                        
AA          -     A     TT        AAAAAGAT  AATAA       ---   TTAGAATGCCGCTTAGAATACCGTATACGTATTTTGTAATTTATATCTATTTTTTTATTGATTAACATATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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