Plant MITE

SE2850246

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9251
Sorghum bicolor
SE2850246
PIF/harbinger
To15
chromosome_9:52807666-52808463
TTA
AGAGCATCTCCAACAGTTATGTAATTAGACTTTGC

Secondary structure and sequence

TSD TIR

5'

3'

TT         C                A  C     ATTATTAAAATTTATCAAAAACCTTA     --  CTCTCCAACAGTTTTGTATTTGACTTATGCATTTTGTCAAACTTGGCATTTGATGGACCAAACTTGTCATTTTTGCATAGGCACAATATCTTGGCAGTTTTGATATCCCGAGAATCTTGGACTCCTTGTCGTGCCCGTACTCCCCACGTCGCGGTAGTTTCCCGCGAGACGACTCCTCCCCGTGCGCGACTCTTTTCTTTTTCCCGCGCGCTGCCTCCTTTCTTTGCGTGCCGCCTCCGTTCTTCGCGCGGGGACGAAGGAGATTCATCGCCGCCTCCTTTTCTTGCAGCGACGCGAGGCTACCTCGAGCAGATGTCGCCGGCCTGGATCAAGC
  AGAGCATCT CAACAGTTATGTAATT GA TTTGC                          AAAAT  TG                                                                                                                                                                                                                                                                                                                                              
  ||||||||| |||||||||||||||| || |||||                          |||||  ||                                                                                                                                                                                                                                                                                                                                               
  TCTCGTAGA GTTGTCAATACGTTAA TT AAACG                          ACGGT  AG                                                                                                                                                                                                                                                                                                                                              
AT         A                C  T     ------------GTAAACAACTTCAA     AC  GGATTTGCAAAACAGTTTCCTTTTTATTCAAGTAGAGATTCACAAACCGTAAAAAACTGAACCGTAAAGGATTTTATCACCTGGGTTGATAAAAACAGACTCTTAGAAAGTAGAAGCGCCCTTTAAGAGAGCGCGCAGCGTGCGCGCGTTAAGGAAGCGGGCAGTGGCGGTTAAGAGAGCGCGCAGCGCGCCGGCACAAGTAGGGCGTTCAGGTGCAACGGCGAACCAGGTCCAGCAGCTCTAGGCTAGCTCCGTTGTCAGGGTCCATCGTGGTGCTGTAGGTCCAGGGTTCCGAAGGCGTTCCTCCCGAAGCTCCAGCGGTTTTCTCCAGCAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850246

TTAGAGCATCTCCAACAGTTATGTAATTAGACTTTGCATTATTAAAATTTATCAAAAACCTTAAAAATTGCTCTCCAACAGTTTTGTATTTGACTTATGCATTTTGTCAAACTTGGCATTTGATGGACCAAACTTGTCATTTTTGCATAGGCACAATATCTTGGCAGTTTTGATATCCCGAGAATCTTGGACTCCTTGTCGTGCCCGTACTCCCCACGTCGCGGTAGTTTCCCGCGAGACGACTCCTCCCCGTGCGCGACTCTTTTCTTTTTCCCGCGCGCTGCCTCCTTTCTTTGCGTGCCGCCTCCGTTCTTCGCGCGGGGACGAAGGAGATTCATCGCCGCCTCCTTTTCTTGCAGCGACGCGAGGCTACCTCGAGCAGATGTCGCCGGCCTGGATCAAGCAACGACCTCTTTTGGCGACCTCGAAGCCCTCCTTGCGGAAGCCTTGGGACCTGGATGTCGTGGTGCTACCTGGGACTGTTGCCTCGATCGGATCTCGACGACCTGGACCAAGCGGCAACGTGGACTTGCGGGATGAACACGGCCGCGCGACGCGCGAGAGAATTGGCGGTGACGGGCGAAGGAATTGCGCGCGTGCGACGCGCGAGAGAATTTCCCGCGAAGATGAAAGATTCTCAGACAAAAATAGTTGGGTCCACTATTTTAGGAAATGCCAAGTCAAAAAATGCCAAACACTTAGAGATGAACTTATTTTTCCTTTGACAAAACGTTTAGGGACATGGCAAACTTCAACAAATGGCAAATTTCAATTGCATAACTGTTGAAGATGCTCTTA

Copy Cancel