Plant MITE

SE2830247

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9252
Sorghum bicolor
SE2830247
hAT
Hat22
chromosome_1:7261902-7262457
TCCCTATT
TATACCTGGGCA

Secondary structure and sequence

TSD TIR

5'

3'

TCCCTATT            ---   G  -    ---         CCC GCACGACACCGGGCCGGCCCGGCACGTTGCCTAACGGGCCGAGGGGGCCCGTCGTGCCCTGCGGGCCGTGCCTTACCGGCCTGCGGGCCTGACCTCCGGCCCAGGCACGGGCCCGTGGGCCATTTTGCGTACCGGGCGGGCCCGTCAGGCCGGGCCAGCCCATAGCCCGTTGAACAATAACATATCAATAAATACAGATTTAAAAGCATATTTCAAACACATTCATCAATTCA
        TATACCTGGGCA   ACG GC CGGG   CCGGCCCGG   G                                                                                                                                                                                                                                         
        ||||||||||||   ||| || ||||   |||||||||   |                                                                                                                                                                                                                                          
        ATATGGACCCGT   TCG GC CGGG   TCGTGCCGG   G                                                                                                                                                                                                                                         
TTATCCCT            ACG   G  T    CAC         --- CTTCGGGCAGTAAAACCGGGCCGGGATCGGGCCGGGCCGGGCTTCCAGTAACCCGGGCCCGACCGTGCCGTGCCCCGACGTCCGGCACGAACCCGGCGTGAAGTCCGGGCGCCCGGCCGTGCCGGGCCGGGCGGTTTATTGTTGTAACATATTTTATTGAGTAAAACTATAGATTTAGATAAGAGATGTAGACAGTATACATAAACTTACACAAGAAATATGACTACTTCACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830247

TCCCTATTTATACCTGGGCAACGGGCCGGGCCGGCCCGGCCCGGCACGACACCGGGCCGGCCCGGCACGTTGCCTAACGGGCCGAGGGGGCCCGTCGTGCCCTGCGGGCCGTGCCTTACCGGCCTGCGGGCCTGACCTCCGGCCCAGGCACGGGCCCGTGGGCCATTTTGCGTACCGGGCGGGCCCGTCAGGCCGGGCCAGCCCATAGCCCGTTGAACAATAACATATCAATAAATACAGATTTAAAAGCATATTTCAAACACATTCATCAATTCATCACTTCATCAGTATAAAGAACACATTCAAATACATATGACAGATGTAGAGAATAGATTTAGATATCAAAATGAGTTATTTTATACAATGTTGTTATTTGGCGGGCCGGGCCGTGCCGGCCCGCGGGCCTGAAGTGCGGCCCAAGCACGGCCTGCAGCCCCGTGCCGTGCCAGCCCGGGCCCAATGACCTTCGGGCCGGGCCGGGCTAGGGCCGGGCCAAAATGACGGGCTTCGGGCCGTGCTCACGGGCTCGGGCTGCATGCCCAGGTATATCCCTATT

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