SE2850249

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9254
  • Sorghum bicolor
  • SE2850249
  • PIF/harbinger
  • To2
  • chromosome_2:51191029-51191276
  • TTA
  • AGGCCTTGTTTAGTTCCAAAAAATTTTGCAAAAT

Secondary structure and sequence

TSD    TIR
5'



3'
TT                                  ------CGAC    TA  -  T  - - T  GTATTTGACAAAAATTGTCCAATCATGGACTAACTAGGCTCAAAAGATTCGTCTTGTCAATTT
  AGGCCTTGTTTAGTTCCAAAAAATTTTGCAAAAT          ACTG  GC AC TT T G TT                                                               
  ||||||||||||||||||||||||||||||||||          ||||  || || || | | ||                                                               C
  TCCGGAACAAATCAAGGTTTTTTAAAACGTTTTA          GGGG  TA TG TA C T AG                                                               
AT                                  AAAAGTCTAA    --  G  -  G T -  AAATCTGCGTACGTACTTCATAATTTATATCTATTTTTATTTTTGATTAACGTGTCAAACCAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End