SE2850257

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9262
  • Sorghum bicolor
  • SE2850257
  • PIF/harbinger
  • To1
  • chromosome_5:45736117-45736364
  • TGA
  • AGGCCTTGTTTAGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TG                      --- TTT   ---------        --  GTGTAGCATTTTGTTTTTATTTGACAAACATTGTCCAATCATAGACTAACTAGGCTCAAAAGATTCGTCTCATGATT
  AGGCCTTGTTTAGTTCCGAAAA   C   TTG         GTTTTTGG  TA                                                                             
  ||||||||||||||||||||||   |   |||         ||||||||  ||                                                                             T
  TCCGGAACAAATCAAGTGGGGT   T   GGT         GTTCTAAG  AC                                                                             
AG                      TTT ---   TTAAAAAAA        GG  AGTGTAGCTTAGAACGCCGTGTACGTACCTCATAATTTATATCTGCTTTTGTTTTTAATTAATGTGTCAAATGGACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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