Plant MITE

SE2850258

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9263
Sorghum bicolor
SE2850258
PIF/harbinger
To2
chromosome_10:56959037-56959285
TAA
AGGCCTTGTTTAGTTTCTAAAAAATTTTGCAAAATT

Secondary structure and sequence

TSD TIR

5'

3'

TA               T                    ----TTTT   -  ---   -     CA    ATCT  AGACGCATGCATGGAGTATTAAATATAGATAAAAATAAAAACTAATTGCACAGTTT
  AGGCCTTGTTTAGTT CTAAAAAATTTTGCAAAATT        AGA TT   CTC CGTCA  TCGA    TT                                                        
  ||||||||||||||| ||||||||||||||||||||        ||| ||   ||| |||||  ||||    ||                                                        G
  TCCGGAACAAATCAA GGTTTTTTAAAACGTTTTAG        TCG GA   CAA CATAA  ACTG    TT                                                        
AA               -                    CTGTGACA   T  AAG   A     --    ----  TTTAACAGTTTAGTACCTGATTGATCCGAATTTTCTAAGCAGAGCAGTTAAAGCTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850258

TAAGGCCTTGTTTAGTTTCTAAAAAATTTTGCAAAATTTTTTAGATTCTCCGTCACATCGAATCTTTAGACGCATGCATGGAGTATTAAATATAGATAAAAATAAAAACTAATTGCACAGTTTGGTCGAAATTGACGAGACGAATCTTTTAAGCCTAGTTAGTCCATGATTTGACAATTTTTGTCAAATACAAACGAAAGTGCTACAGTGTCGATTTTGCAAAATTTTTTGGAACTAAACAAGGCCTAA

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