Plant MITE

SE2810259

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9264
Sorghum bicolor
SE2810259
Tc1/Mariner
St7
chromosome_7:51923221-51923484
TA
TACTCCCTCCATACCCATAAAAAAAGACCTTTTGGACAAGG

Secondary structure and sequence

TSD TIR

5'

3'

                     AA   A C   T      G TTTG    AAACATTGGGAATATAAATCATG       TTTAAGTTGTTGAATTTGGAAATGTGAAAACCATATGAATAGATTTGTCTTGAAAAATACTTTC
TACTCCCTCCATACCCATAAA  AAG C TTT GGACAA G    GGTC                       AATAACT                                                                
|||||||||||||||||||||  ||| | ||| |||||| |    ||||                       |||||||                                                                 
ATGAGGGAGGTATGGGTATTT  TTC G AAA CCTGTT C    CCAG                       GGTTTCG                                                                
                     CC   A C   T      G TGTG    ----------------------A       GATTGAAACTGAGGAACAAAAATATTTTTATAAATAGTTTTTTCACCATGTACATATGAAAATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810259

TACTCCCTCCATACCCATAAAAAAAGACCTTTTGGACAAGGTTTGGGTCAAACATTGGGAATATAAATCATGAATAACTTTTAAGTTGTTGAATTTGGAAATGTGAAAACCATATGAATAGATTTGTCTTGAAAAATACTTTCATAAAAGTATACATGTACCACTTTTTTGATAAATATTTTTATAAAAACAAGGAGTCAAAGTTAGGCTTTGGAGACCGTGTCGTTGTCCTAAACGACTTCCTTTATGGGTATGGAGGGAGTA

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