SE2850262

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9267
  • Sorghum bicolor
  • SE2850262
  • PIF/harbinger
  • To3
  • chromosome_8:48578789-48579253
  • TAA
  • AGGCCTTATTTAGTTCGCAAAAATTTTCAAGATTTTCCGTCAAATCGAATCTTTGGTCGCATGTATAGAGCATTAAATATAGATGAA

Secondary structure and sequence

TSD    TIR
5'



3'
TA   C   ----A        G     A             C     A          TG T  C      A                    AATAAA         AAC      C                           A        C  C         C                          A          C    ACCACAAATTTTACA       GCC
  AGG CTT     TTTAGTTC CAAAA TTTTCAAGATTTT CGTCA ATCGAATCTT  G CG ATGTAT GAGCATTAAATATAGATGAA      AACTAATTG   AGTTTA CTGTAATTTGTGAGATGAATCTTTTGA TCTAGTTA TT GTGATTGGA AATGTTTGTCAAATAAAAACGAAAGT CTGCAGTAGC AAAA               AACTAAG   
  ||| |||     |||||||| ||||| ||||||||||||| ||||| ||||||||||  | || |||||| ||||||||||||||||||||      |||||||||   |||||| ||||||||||||||||||||||||||| |||||||| || ||||||||| |||||||||||||||||||||||||| |||||||||| ||||               |||||||    
  TCC GAA     AAATCAAG GTTTT AAAAGTTCTAAGA GCAGT TAGTTTAGAA  C GT TACGTA CTCGTAATTTATATCTATTT      TTGATTAAC   TCAAAT GACATTAAATGCTCTACTTAGAAAACT GGATCAAT AG TACTAACCT TTATAAACAGTTTATTTTTGCTTTCA GATGTCATCG TTTT               TTGATTT   
AA   A   CAAAC        G     A             A     G          TG T  A      C                    GTTCTA         GTA      A                           C        C  A         A                          C          -    AGATTTTTTTTACGC       GTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End