SE2850268

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9273
  • Sorghum bicolor
  • SE2850268
  • PIF/harbinger
  • To2
  • chromosome_5:53163189-53163682
  • TAA
  • AGGCCTTGTTTAGTTCCGAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA       -               CTTTTT            ------         T   TTTTTATTTGATAAATAGTCTTCAATCATGGACTAACTAGATTTAAAAGACTAACTAGATTCAAAAGATTCATTTTGCGATTTAAAGATAAACTGTGTAATTAGTTTTTTCATTTATATTTAGTGCTTCATGCATGTGCTGTAAGATTCGATGTGACGGGGAATCTTAAAAAAATTTTGGTTTTTAGGGT
  AGGCCTT GTTTAGTTCCGAAAA      GGTTTTCAGTAC      TGTAGCACT TCG                                                                                                                                                                                              
  ||||||| |||||||||||||||      ||||||||||||      ||||||||| |||                                                                                                                                                                                               
  TCCGGAA CAAATCAAGGTTTTT      ACGTTTTAAAAA      AGAGCAGTG TAA                                                                                                                                                                                              
AA       A               --TAAA            GTCTAA         -   TTTAGAAATCTGTGTACGTACTTCATAATTTATATCTGTTTTCATTTTTAATTAACGTGTCAAACCGGCCTTAACTGCTCTACTTAGAAAACTCGGATCAATCAGGTGTTAACCTGTTATAAACAGTTTTATGTTTGCTTTAACGATGTTACAGCTAAGGATTTTAAAAAACCTTGATTTATAAATCAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3