Plant MITE

SE2850270

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9275
Sorghum bicolor
SE2850270
PIF/harbinger
To2
chromosome_2:19851681-19851929
CTA
GGCCTTGTTTAGTTCCAAAATATTTTGCAAAAT

Secondary structure and sequence

TSD TIR

5'

3'

CTA              C     -T            CGACAC  T     TTTC      --   T --------  -  ATATTGTCCAATCATAGACTAACTAGGCTCAAAAGATTCGTCTCGTCAATTTC
   GGCCTTGTTTAGTT CAAAA  ATTTTGCAAAAT      TG AGCTT    GTTTGT  ATT G        AC AA                                                     
   |||||||||||||| |||||  ||||||||||||      || |||||    ||||||  ||| |        || ||                                                      
   CCGGAACAAATCAA GTTTT  TAAAACGTTTTA      TC TAAGG    GGCAGT  AGC T        TG GT                                                     
ATC              A     TT            -AAAAG  -     ----      GT   - TAGAAATC  T  ACGTACTTCATAATTTATATCTGTTTTTATTTTTGATTAACGTGTCAAACCAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850270

CTAGGCCTTGTTTAGTTCCAAAATATTTTGCAAAATCGACACTGTAGCTTTTTCGTTTGTATTTGACAAATATTGTCCAATCATAGACTAACTAGGCTCAAAAGATTCGTCTCGTCAATTTCGACCAAACTGTGCAATTAGTTTTTATTTTTGTCTATATTTAATACTTCATGCATGTGTCTAAAGATTCGATGTGACGGGGAATCTGAAAAATTTTGCAAAATTTTTTTGAAACTAAACAAGGCCCTA

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