SE2830272

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9277
  • Sorghum bicolor
  • SE2830272
  • hAT
  • Hat92
  • chromosome_10:53807954-53808733
  • CTCTTCTA
  • CAGTGGCGGACCCAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
  CTCTTCTA  G             AT  GCTCAAGACTAGGGCCAAATTCTCCTAGCGAAAGGTTGAAAACTACACCGTAATTTATATATATGTGTGGTCCTGCAACCTGCGCATACATGAATCACAGGTCTTGTTTAGTTCCTCTTAAAACTAAAAACTTTTCAAGATTTTTGTCACATCGAATCTTGCGGCACATGCATACAACATTAAATATAGATAAAAAAATAACTAATTACACACTTTGCTTGTAATTTGCGAGACGAATCTTTTGAGCCTAGTTAGTCCATAATTGGACAATAATTGCCACATATAAACGAAAGTACTACAGTAACCTAAAAAGTTTTCACAAGGGAACTAAACACGGCGCCAGTATTTCACGCTCATCTCC
          CA TGGCGGACCCAGG  TC                                                                                                                                                                                                                                                                                                                                                                         
          || |||||||||||||  ||                                                                                                                                                                                                                                                                                                                                                                         T
          GT ACCGCCTGGGTCC  GA                                                                                                                                                                                                                                                                                                                                                                         
CGATCTTCTC  A             -A  TTCCGGTGATCCCGGTTCCGGGATCAGTACTAGGTATATTAAATGTATGTGGAATTATTATCAATAGTACAATAGTCTTAAATAGGATTATTGAAAGTTCGGTCGTTGGTCTGGTTCATCTATTCTTTGTGGCTGCGGAGAGAGTAACAGAGCAGGATCAGAACACAGAGTTGGGAGAGCGAGACTACGAGCGCGTGAGTGCAGCGGCGAGCATCACCCACAAACAGCGGACGATCACGGAGTAACACGGCATCAGGATGCTCGTCCACAGGCGGTCGCGGATAGTCGACTACTTGGGTAGGGACGCGGCTCCCGTGTTTTATGAACGGAGTAGATTAACACATGCCCAGTAGCAGTGTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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