SE2850275

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9280
  • Sorghum bicolor
  • SE2850275
  • PIF/harbinger
  • To2
  • chromosome_4:57189171-57189419
  • TAA
  • AGGCCTTGTTTAGTTCCCAAAAAATTTTGCAAAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               CC     A             TTTC  ATTCCCCGTCACATCGAATCTTTAGACACATGCATGAAGTATTAAATATAGACAAAAATAAAAACTAATTGCACAGTTTGGT
  AGGCCTTGTTTAGTT  CAAAA ATTTTGCAAAATT    AG                                                                                  
  |||||||||||||||  ||||| |||||||||||||    ||                                                                                  C
  TCCGGAACAAATCAA  GTTTT TAAAATGTTTTAG    TG                                                                                  
AA               -A     A             ---C  TGACATCGAAAAAGCAAACATAAACTGTTTATAACAGGTTAGTACCTGATTGATCCGAGTTTTCTAAGTAGAGCAGTTAAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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