SE2820278

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9283
  • Sorghum bicolor
  • SE2820278
  • Mutator
  • M10
  • chromosome_4:669694-670141
  • ATAAGGGGC
  • GGCAAAATATTTGGTGCAAACCACATCTTCGGTGCAATCGTGAAAACC

Secondary structure and sequence

TSD    TIR
5'



3'
ATAAGGGGC                     C                        -  CCAT                   --           -              AA                                                  A                                 C                  T       T  C
         GGCAAAATATTTGGTGCAAAC ACATCTTCGGTGCAATCGTGAAAA CC    TAAAATCATACTTAGGAGT  TTAAAAAAAAT AAAACTATGCACGA  AATAGTGCATCTATAGATGTGCATTGTCACAAAATTTGAGATTCAAACTC TTTTGCGAAAATTCATATGAAAATAACAAATTT ATTTGCATATGCACTAGA GACAAAA TC 
         ||||||||||||||||||||| |||||||||||||||||||||||| ||    |||||||||||||||||||  ||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| || T
         CCGTTTTATAAGTCACGTTTG TGTAGAAGCCACGTTAGCACTTTT GG    GTTTTGGTATGAATCCTCA  AGTTTTTTTTA TTTTGATACGTGTT  TTATCACGTAGATATCTATACGTAACAGTGTTTTAAACTCTAAGTTTGAG AAAACGCTTTTAAGTATACTTTTATTGTTTAAA TAAACGTATACGTGATCT CTGTTTT AG 
CGGGGAATA                     A                        A  AAAC                   AA           A              -G                                                  C                                 A                  C       T  G

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End