Plant MITE

SE2810279

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9284
Sorghum bicolor
SE2810279
Tc1/Mariner
St13
chromosome_9:4694642-4694881
TA
TACTCAATCCATCCCAAATTATAAGTCGTTTGACTTTTTTAATATCAAGTTTGACCACTCGTCTTATTCAAAGTTTTGTATAAAATATCAATTTT

Secondary structure and sequence

TSD TIR

5'

3'

     AA                                 A  A                             -T     A    -   -    T   -----     TTGTGTATTGGTTTAT
TACTC  TCCATCCCAAATTATAAGTCGTTTGACTTTTTT AT TCAAGTTTGACCACTCGTCTTATTCAAAG  TTTGT TAAA ATA TCAA TTT     TTTTA                
|||||  ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||  ||||| |||| ||| |||| |||     |||||                 
ATGAG  AGGTAGGGTTTAATATTCAGCAAACTGAAAAAA TG AGTTCAAACTGGTGAGCAGAATAAGTTTT  AAATA GTTT TAT AGTT GAA     TAAGA                
     GG                                 A  G                             TT     C    A   C    T   TTCAG     ACTTCTTGAAAATAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810279

TACTCAATCCATCCCAAATTATAAGTCGTTTGACTTTTTTAATATCAAGTTTGACCACTCGTCTTATTCAAAGTTTTGTATAAAATATCAATTTTTTTTATTGTGTATTGGTTTATTAATAAAAGTTCTTCAAGAATGACTTAAGTTTGACTATATTTGCATAAATTTTTTGAATAAGACGAGTGGTCAAACTTGAGGTAAAAAAAGTCAAACGACTTATAATTTGGGATGGAGGGAGTA

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