SE2830280

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9285
  • Sorghum bicolor
  • SE2830280
  • hAT
  • Hat26
  • chromosome_7:52988506-52988698
  • GTTATTAT
  • ATCAGGGGCGAATCCAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
GTTATT              C G ATAT     TAC       AAG   -- AAACAACGGGGTCAAACACATATTAATTCTCTATTTAAAAGAATAATT
      ATCAGGGGCGAATC A G    TTTGT   TGGGGTC   GAC  T                                                
      |||||||||||||| | |    |||||   |||||||   |||  |                                                T
      TGGTCCCCGCTTAG T C    AAATA   ACCCCAG   TCG  T                                                
TATTAT              A G ACCT     ---       ---   AC AGGGCTACTGAACGATCTTTAAGTGAATTTCGAGAAATTAGGTAGACG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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