SE2850282

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9287
  • Sorghum bicolor
  • SE2850282
  • PIF/harbinger
  • To4
  • chromosome_7:49862787-49863024
  • TAA
  • AGGCCTTGTTTAGTTCACGAAATTTTTTGGGTTTCTCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                A     T        T       CTGTA   ------   T    TT      A   CTATTAT    TT     C   CTAGACTC       ---TCATCT    AA   CG
  AGGCCTTGTTTAGTTC CGAAA TTTTTGGG TTCTCTA     GCA      CTT CGAC  TATTTG TAA       TTAA  ATAGA TAA        AAAAGAT         CGCA  TTA  
  |||||||||||||||| ||||| |||||||| |||||||     |||      ||| ||||  |||||| |||       ||||  ||||| |||        |||||||         ||||  |||   
  TCCGGAACAAATCAAG GTTTT AAAAGTTC AAGGGGT     TGT      GAA GCTG  GTAAAT ATT       AATT  TATCT ATT        TTTTCTA         GTGT  AAT  
AA                G     T        T       ---AG   AGCTTA   C    -T      -   ---TCGT    TT     -   --------       TTAATTAAC    CA   CT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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