SE2850287

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9292
  • Sorghum bicolor
  • SE2850287
  • PIF/harbinger
  • To2
  • chromosome_6:40401340-40401588
  • TTA
  • AGGCCTTGTTTAGTTCCAAAAAATTTTGCAAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                 -AA               CGACACTGTAGCACTTTC      ATTTGACAAATATTGTCCAATCATGGACTAATTAGACTCAAAAGATTCGTCTCGTCAATTTCGACCAA
  AGGCCTTGTTTAGTTCC   AAAATTTTGCAAAAT                  GTTTGT                                                                    
  |||||||||||||||||   |||||||||||||||                  ||||||                                                                    A
  TCCGGAACAAATCAAGG   TTTTAAAACGTTTTA                  AAAGGC                                                                    
AT                 ATC               ---------AAAAGTCTA      AGTGTAGCTTAGAAATCTGCGTACGTACCTCATAATTTATATCTGCTTTTATTTTTGATTAATATGTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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