SE2850288

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9293
  • Sorghum bicolor
  • SE2850288
  • PIF/harbinger
  • To14
  • chromosome_5:60936497-60936741
  • TAG
  • GGGCCTTGTTTAGTTCTAAATTTTTTTGCAAAATAAATA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                 -   TTT          -T     --C    GCACTTTCATTTATATTTGATAAATATTGTCTAATCATGGACTAACTAGGCTCAAAAGATTCAGTAAATTACAC
  GGGCCTTGTTTAGTTCT AAA   TTTTGCAAAA  AAATA   TGTA                                                                          
  ||||||||||||||||| |||   ||||||||||  |||||   ||||                                                                          A
  TCCGGAACAAATCAAGG TTT   AAAACGTTTT  TTTGT   AAGC                                                                          
GA                 G   TTT          TT     CTA    GTAGTGTAGCTTAAAACATCGCGGACGTACCTCGTAATTTATATCTATTTTTATTATTGATTAACGTGTCAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3