SE2850290

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9295
  • Sorghum bicolor
  • SE2850290
  • PIF/harbinger
  • To10
  • chromosome_1:48010398-48010541
  • TAA
  • AGGCCTTGTTTGGATGCGCATGTATTCACCTCAATCCACATGTGTTGAAGTGGATTGGAGTGGAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                  CA         C                 AA                  AAA
  AGGCCTTGTTTGGATGCG  TGTATTCAC TCAATCCACATGTGTTG  GTGGATTGGAGTGGAATT   
  ||||||||||||||||||  ||||||||| |||||||||||||||||  ||||||||||||||||||    
  TCCGGAACAAACCTACGT  ACATAGGTG AGTTAGGTGTATACAAC  CACCTAACTTTATCTTGA   
AA                  AC         A                 CC                  ATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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