SE2850291

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9296
  • Sorghum bicolor
  • SE2850291
  • PIF/harbinger
  • To2
  • chromosome_1:9888916-9889388
  • TTA
  • AGGCCTTGTTTAGTTTAAAAAA

Secondary structure and sequence

TSD    TIR
5'



3'
TT                AA    TTTTA     ----    C  G                 ATT                                AC           A      C    -CCGATC        C           A                  ACT             TA  T                     G       TTGCAAAAATTTTTGGGAACTA
  AGGCCTTGTTTAGTTT  AAAA     GAAAA    TCGG AC GTAGCACTTTCGTTTGT   TGACAAATATTATCTAATTATAGACTAACTAG  TTAAAAGATTT TCTCGT AATT       AAACTGTG AATTAGTTTTT TTTTCGTCTATATTTAAT   TCATGCATGTGTT  AA ATTCGATGTGACGGGGAATCT AAAAGTT                      
  ||||||||||||||||  ||||     |||||    |||| || |||||||||||||||||   ||||||||||||||||||||||||||||||||  ||||||||||| |||||| ||||       |||||||| ||||||||||| ||||||||||||||||||   |||||||||||||  || ||||||||||||||||||||| |||||||                      A
  TCCGGAACAAATCAAG  TTTT     CTTTT    AGCC TG CATCGTGAAAGCAAACA   ACTGTTTATAATAGGTTAGTATCTGATTGATC  AATTTTCTAAG AGAGCA TTAA       TTTGACAC TTAATCAAAAA AAAAGCAGATATAAATTA   AGTACGTACACGG  TT TAAGCTACACTGTTCCTTAGA ACTTTTG                      
AT                GC    ---CA     CAAA    A  A                 AAC                                CT           C      -    ATGTCGA        A           C                  CAT             TG  C                     -       AAAAACCAAAAGTCCCACTTGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End