Plant MITE

SE2830296

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9301
Sorghum bicolor
SE2830296
hAT
Hat27
chromosome_7:61071465-61072020
CTTGGAAG
AAGCTTAGCAGCCGGGGTACGGGAACATGGGTACGT

Secondary structure and sequence

TSD TIR

5'

3'

CTTGG                GTA G       -        ---   T    C -----    ACTTCGTTCCGAAACGTGGAACGGGAACATCATGGAACATCGTTCCCAAATGCGGTGGAACACGAATCATATATAGGAGCAATCATAGGAACGTCAGTCCCAAGCGACTATGGAACTTCGTGGTGTGTGTGCATACTGCGCCGTGCCCGTCCATGAGCGGTCGGCGAAAAATCTAGATGGTGATTGACTCATTCGCCTACACATGCAATGAGCCAAAAG
     AAGCTTAGCAGCCGGG   C GGAACAT GGGTACGT   TCC CGTT C     GGGA                                                                                                                                                                                                                           
     ||||||||||||||||   | ||||||| ||||||||   ||| |||| |     ||||                                                                                                                                                                                                                           G
     TTCGAATCGTCGGTTC   G CCTTGTA CCCATGCA   TGC CCTT G     TGCG                                                                                                                                                                                                                           
GAAGG                AAG G       T        CCA   -    - CACCA    CCATGCTGTAAGAGTATTTGATACCTTGCATCCCCCATATATCGAAGCAGAGCAAGGAAATTCAACGCCTTGCGCAAGGTGAAAGATTTCCTTGCACAAACCCTGCATCACCAACCGAGTCTATCAAAATATACAACAAAACTTGGTTTACTCAAGCTAAAGATCGCACTATATCAAATGATAACATAAAAACAAAGTAAATCCCGACAGGTTGAGGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830296

CTTGGAAGCTTAGCAGCCGGGGTACGGGAACATGGGTACGTTCCTCGTTCCGGGAACTTCGTTCCGAAACGTGGAACGGGAACATCATGGAACATCGTTCCCAAATGCGGTGGAACACGAATCATATATAGGAGCAATCATAGGAACGTCAGTCCCAAGCGACTATGGAACTTCGTGGTGTGTGTGCATACTGCGCCGTGCCCGTCCATGAGCGGTCGGCGAAAAATCTAGATGGTGATTGACTCATTCGCCTACACATGCAATGAGCCAAAAGGTTGGAGTTGGACAGCCCTAAATGAAACAAAAATACAATAGTAAACTATATCACGCTAGAAATCGAACTCATTTGGTTCAAAACAACATATAAAACTATCTGAGCCAACCACTACGTCCCAAACACGTTCCTTTAGAAAGTGGAACGCGTTCCGCAACTTAAAGGAACGAGACGAAGCTATATACCCCCTACGTTCCATAGTTTATGAGAATGTCGTACCGCGTACCACGTTCCCGTACCACGTACCCTATGTTCCGGGAACTTGGCTGCTAAGCTTGGAAG

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