SE2850300

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9305
  • Sorghum bicolor
  • SE2850300
  • PIF/harbinger
  • To14
  • chromosome_5:56198200-56198449
  • TAA
  • AGGCCTTGTTTAGTTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                 AAATTTT     C     -----AG       A   - TT    ----   ---  T TGACAAATATTGTCCGATCATGGACTAACTAGGCTCAAAAGATTTGTCTCGTAAAT
  AGGCCTTGTTTAGTTCC       TTTTG AAAAT       GAATAGT GCA T  TCGT    TTG   TA T                                                        
  |||||||||||||||||       ||||| |||||       ||||||| ||| |  ||||    |||   || |                                                        T
  TCCGGAACAAATCAAGG       AAAAC TTTTA       TAAAGGG TAG G  TATA    AAC   GT G                                                        
AA                 GTTTTAT     A     AAGAGTC       -   T --    TTAG   GCC  - TATGTACTTAGTTATTTATATCTATTTTCTTTATTTATTAATGTGTCAGATAGACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3