Plant MITE

SE2830303

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9308
Sorghum bicolor
SE2830303
hAT
Hat2
chromosome_2:17544769-17544946
TAAATACT
TAAGGATGGGGACGGTGCTCCAAACGGGTACCCGCGGTTCTTCTCTAGTGTAACTAAATGAACTAAA

Secondary structure and sequence

TSD TIR

5'

3'

TAAATACT            C   -G       C              C             CTA           TGAAAAAAAT    A  GG
        TAAGGATGGGGA GGT  CTCCAAA GGGTACCCGCGGTT TTCTCTAGTGTAA   AATGAACTAAA          GAGG AA  
        |||||||||||| |||  ||||||| |||||||||||||| |||||||||||||   |||||||||||          |||| ||   
        ATTCCTACCCCT CCG  GAGGTTT CCTATGGGCGCCAA AAGAGATCACATT   TTACTTGATTT          CTCT TT  
TCATAAAT            -   GA       A              A             AAA           ----------    G  AA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830303

TAAATACTTAAGGATGGGGACGGTGCTCCAAACGGGTACCCGCGGTTCTTCTCTAGTGTAACTAAATGAACTAAATGAAAAAAATGAGGAAAGGAATTGTCTCTTTAGTTCATTAAATTACACTAGAGAAAAACCGCGGGTATCCATTTGGAGAGGCCTCCCCATCCTTATAAATACT

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