SE2850309

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9314
  • Sorghum bicolor
  • SE2850309
  • PIF/harbinger
  • To1
  • chromosome_10:7505148-7505402
  • TAA
  • AGGCCTTGTTTAGATACA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               A  CCCAAAATTCTAAAACTTTACA     ----- TCCATCACATCACATCGAATCTTTGGATGCATGCATGAAGCATTAAATATAAATAAAAAAAATAACTAATTACACAGTTTATC
  AGGCCTTGTTTAGAT CA                      AGATT     C                                                                                   
  ||||||||||||||| ||                      |||||     |                                                                                   T
  TCCGGAACAAATCTA GT                      AACTT     C                                                                                   
AA               C  -------------TTAAAAAAA     CAAAC GTGACATCGTAAAAGCAAACATAAACTGTTTATAACAGGTTGATACCTGATTGATCTGAGTTTTCTAAGCAGAGCACTAAATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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