Plant MITE

SE2850310

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9315
Sorghum bicolor
SE2850310
PIF/harbinger
To4
chromosome_4:1574447-1574693
TTA
AGACCTTGTTTAGTTCCAAAAAATTTTACAAAATT

Secondary structure and sequence

TSD TIR

5'

3'

TT  A                 AAA    A       TTTC  ATTTCTCGTCACATCAAATCTTGCGGCACATGCATGAAACATTAAATATAGATAAAAAAATTAATTAATTACACAGTTTACC
  AG CCTTGTTTAGTTCCAAA   TTTT CAAAATT    AG                                                                                  
  || |||||||||||||||||   |||| |||||||    ||                                                                                   
  TC GGAATAAATCAAGGTTT   AAAA GTTTTAG    CG                                                                                  
AT  C                 AAA    C       ---T  TAACATCGTGAAAACAAACATAAACTGTTTATAACAGGTTAGTACCTGATTGATCCGAGTTTTCTAAGCAGAGCGTTTAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850310

TTAGACCTTGTTTAGTTCCAAAAAATTTTACAAAATTTTTCAGATTTCTCGTCACATCAAATCTTGCGGCACATGCATGAAACATTAAATATAGATAAAAAAATTAATTAATTACACAGTTTACCTTAATTTGCGAGACGAATCTTTTGAGCCTAGTTAGTCCATGATTGGACAATATTTGTCAAATACAAACAAAAGTGCTACAATGCTGATTTTGCAAAAAAATTTGGAACTAAATAAGGCCTTA

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