SE2850311

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9316
  • Sorghum bicolor
  • SE2850311
  • PIF/harbinger
  • To5
  • chromosome_7:10490071-10490695
  • TTA
  • AGAGCATCTTCAAGGGTTATGCATTTAGACTTTGCATTT

Secondary structure and sequence

TSD    TIR
5'



3'
TT               G         --   AC         --ACTAA        AAAAAACTTAAAAT   CTATCCAATGGTTTTGCATTTAGACTTTGCAATTTGCATAACTTGGCATTTAGAGGTCTAGACTTGGCATATATGCCAAGCCCTCCAGGCTTTGCAAATCGTGATCGTCCCACGCCCGCGCGACTCGGGCTGCGTTCCGTCCACCCGCGCGACTCCTCCACGCACGAGCACCGCCAAGTGTTGCCGCGAAGCTTTGCCGCAGAGGATCAGGACGGGGCGAGGTTCAGGACGGACGAGGTTCAGGA
  AGAGCATCTTCAAGG TTATGCATT  TAG  TTTGCATTT       TTTGCAAA              GTG                                                                                                                                                                                                                                                     
  ||||||||||||||| |||||||||  |||  |||||||||       ||||||||              |||                                                                                                                                                                                                                                                     C
  TCTCGTAGAGGTTCC AATACGTAA  ATC  AAACGTAAA       AAACGTTT              GGT                                                                                                                                                                                                                                                     
AT               G         AA   -A         CTACCTC        -----------CAA   TTATTTTTACCGTTCCTATTTTTCCGCACTAGAGGTTGCCAAAACGTAAAAGTGAACCGTAACTCTCTTAAAACCCAAGTGTGAAAAAAAGGGCTTCCAAAAAGAGAACCGTACGCTAAAAGACAGTGGACATTAAGAAGCGCGCAGCGCGCGGAAGCATAGCGCCGTAAGGAGCGTCGGCAGCAGCGGGGCAGGTCCAGGAGCGCGGCGCAGCAAACCAGGAGTGGGCAGTACTTGGAGCGGGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End