Plant MITE

SE2850316

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9321
Sorghum bicolor
SE2850316
PIF/harbinger
To14
chromosome_8:49296265-49296510
TAA
AGGCCTTATTTAGTTGC

Secondary structure and sequence

TSD TIR

5'

3'

TA               G ATTTTTT           GAACATTGTA    TTT    TGTATTTGACAAATATTGTCCAATCATGGACTAACTAGGCTCAAAAAGTTTGTCTTATAAATTACAGGCA
  AGGCCTTATTTAGTT C       TTTTGCAAAAT          GCAT   TGTT                                                                      
  ||||||||||||||| |       |||||||||||          ||||   ||||                                                                      A
  TCCGGAATAAATCAA G       AAAACGTTTTA          GTTC   TAAA                                                                      
AA               G --ATTTT           ------AAAA    ---    GAGCAGTGTAGTTTAGAACGCCGTGTACGTACCTCGTAATTTATATCTATTTTTATTGATTAATGTATCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850316

TAAGGCCTTATTTAGTTGCATTTTTTTTTTGCAAAATGAACATTGTAGCATTTTTGTTTGTATTTGACAAATATTGTCCAATCATGGACTAACTAGGCTCAAAAAGTTTGTCTTATAAATTACAGGCAAACTATGTAATTAGTTATTTTTATCTATATTTAATGCTCCATGCATGTGCCGCAAGATTTGATGTGACGAGAAATCTTGAAAAATTTTGCAAAATTTTAGGAACTAAATAAGGCCTAA

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