SE2850317

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9322
  • Sorghum bicolor
  • SE2850317
  • PIF/harbinger
  • To14
  • chromosome_6:49401167-49401416
  • TAA
  • AGGCCTTGTTTAGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA           A   CCTCACAAA           TTTTCA   T -    --  A  TCAAATCTTGCGGCACATACATGGAGCATTAAATATAGATTAAAAAATAACTAATTGCACAGTTTGTCT
  AGGCCTTGTTT GTT         TTTTACAAAAT      GAT C TCCA  TC CA                                                                     
  ||||||||||| |||         |||||||||||      ||| | ||||  || ||                                                                      
  TCCGGAACAAA CAA         AAAATGTTTTA      TGA C TCGT  AA AC                                                                     
AA           A   -CATTTAAA           --CCTG   - A    GA  -  AAACATAAACTGTTTATAACGAGTTAGTATCTGATTAATCTGAGTTTTTTCTAAGCAGAGCGTTTAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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