Plant MITE

SE2810319

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9324
Sorghum bicolor
SE2810319
Tc1/Mariner
St6
chromosome_1:21990913-21991173
TA
TACTCCCTCCGTCTCCGAAAGCT

Secondary structure and sequence

TSD TIR

5'

3'

             T C       TCAACTC     ATCCG    ---            T         C   T      A        ATCAATATCTATGACATAAAATA         TAAAAATATATTCTATAATAA
TACTCCCTCCGTC C GAAAGCT       CTAGA     TGTC   AGTCAAATTTTT TAACTTTGA TAA TTTATA AAAAGAGT                       AGTATATTT                     
||||||||||||| | |||||||       |||||     ||||   |||||||||||| ||||||||| ||| |||||| ||||||||                       |||||||||                      
ATGAGGGAGGCAG G CTTTCGA       GATCT     ACAG   TCAGTTTGAAAA GTTGAAACT GTT AAATAT TTTTTTTA                       TAAATATCA                     
             T A       CATTAAA     ---CA    GAT            T         A   T      C        -----------------CGATTC         TGGTTTTATTATGGTAATTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2810319

TACTCCCTCCGTCTCCGAAAGCTTCAACTCCTAGAATCCGTGTCAGTCAAATTTTTTTAACTTTGACTAATTTTATAAAAAAGAGTATCAATATCTATGACATAAAATAAGTATATTTTAAAAATATATTCTATAATAAATTTAATGGTATTATTTTGGTACTATAAATCTTAGCATTTTTTTCTATAAATTTGATCAAAGTTGTAAAAGTTTGACTTAGGACAACTCTAGAAATTACAGCTTTCAGTGACGGAGGGAGTA

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