Plant MITE

SE2850323

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9328
Sorghum bicolor
SE2850323
PIF/harbinger
To1
chromosome_3:73370059-73370307
TTA
AGGCCTTGTTTAGTT

Secondary structure and sequence

TSD TIR

5'

3'

TT   C           CACCCTAAAAATCA         --------       - CTCGTCACATCGAATCTTGCGGCACATGCATGAAGCACTAAATATAGATTAAAATAAAAACTAATTGAACAGTTTGC
  AGG CTTGTTTAGTT              AAAAGTTTT        CAAGATT C                                                                             
  ||| |||||||||||              |||||||||        ||||||| |                                                                             C
  TCC GAACAAATCAA              TTTTCAAAA        TCGTGAC T                                                                             
AT   A           -----------CAC         ACCTAAAA       A CGTGAAAGCAAACAAACACAGTTTTTAACAGGTTAATACCTGATTAATCCTAGTTTTTTAAGCAGAGCACTAAATGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850323

TTAGGCCTTGTTTAGTTCACCCTAAAAATCAAAAAGTTTTCAAGATTCCTCGTCACATCGAATCTTGCGGCACATGCATGAAGCACTAAATATAGATTAAAATAAAAACTAATTGAACAGTTTGCCTGTAAATCACGAGACGAATTTTTTGATCCTAATTAGTCCATAATTGGACAATTTTTGACACAAACAAACGAAAGTGCTACAGTGCTAAAATCCAAAAACTTTTCACAACTAAACAAGACCTTA

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