SE2830325

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9330
  • Sorghum bicolor
  • SE2830325
  • hAT
  • Hat29
  • chromosome_4:5501784-5502504
  • GCTATGCC
  • GCTATGCCTAGGGATGAAAGTGGTGTGGAT

Secondary structure and sequence

TSD    TIR
5'



3'
   T   C                TG     AATTC    A  C  -  --CGA    A   -- GAATTTTGAGGATATGGAGAAGAACTTTTAACATCCGTGCGGATACGGGTAATCCGAATCCGATTGTCTGCGGATATAGGGTAGGATATGGAATAGATAAAATCCGACGGATATGGATTATCCGCAAATTTTATGCGGATTATCCGATGTTCAAAATAGGATATCCGAAGGTTTTCTCTTCCAAGACTAAAAAATTTAGGATTTTAAAAAGTTTGTTATCTGAGGACTTGTATTTTATGATGTGTTTGTTTAATGTTCTAATTTTTAAATTAAGAAATTTGCTAGATGCTATTATTTATT
 GC ATG CTAGGGATGAAAGTGG  TGGAT     TCCG AC GA TC     TCCG ATC  C                                                                                                                                                                                                                                                                                                            
 || ||| ||||||||||||||||  |||||     |||| || || ||     |||| |||  |                                                                                                                                                                                                                                                                                                            G
 CG TAT GATCCCTACTTTTGCC  GCCTA     GCCC AT TA GG     GTAT AGG  T                                                                                                                                                                                                                                                                                                            
C  -   C                TA     GCCAC    -  -  T  AAAAA    -   AT AGGCGAAAAGAAACAGCCTAAGCCACGCCTCGCCTATTATGTGCCTACGCCTACACCTATGCCAAAAAAAGCCATCAGCCTTGACCATGCCTATACCTCGCCTTTGCCTAGCCTCTGCCTAAAATTATCAGCTCATTGTACACGTATGTATCTCTTAATATACGAATAGTTCTTAAATAAATCATGTCTTGTTCTTATCCGTTATCTATTATTAGAACGTAACGTAAGGTACAACGACGAGAGTGTGATTATTAATTGTGAAATGTACTATAGAGGTGATTTTTTATTATTCAATAATCG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End