Plant MITE

SE2850326

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9331
Sorghum bicolor
SE2850326
PIF/harbinger
To2
chromosome_4:4654076-4654323
TTA
AGGCCTTGTTTAGTTCCAAAATTTTGGCAAAAT

Secondary structure and sequence

TSD TIR

5'

3'

TT                 --    T   G       -----    A   TAGCAATTTC      ATTTGACAAATATTGTTCAATCATGGACTAACTAGGCTCAAAAGATTCGTCTCGTCAATTCCGACTA
  AGGCCTTGTTTAGTTCC  AAAA TTT GCAAAAT     GAGC CTG          GTTTGT                                                                   
  |||||||||||||||||  |||| ||| |||||||     |||| |||          ||||||                                                                    
  TCCGGAACAAATCAAGG  TTTT AAA CGTTTTA     TCTA AAG          GGCAGT                                                                   
AT                 GG    T   G       AAAAG    -   ----------      GTAGCTTAGAAATCTGCATACGTACCTCATAATTTATATCTATTTTTATTTTTGATTAACGTGTCAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2850326

TTAGGCCTTGTTTAGTTCCAAAATTTTGGCAAAATGAGCACTGTAGCAATTTCGTTTGTATTTGACAAATATTGTTCAATCATGGACTAACTAGGCTCAAAAGATTCGTCTCGTCAATTCCGACTAAACTGTGCAATTAGTTTTTATTTTTATCTATATTTAATACTCCATGCATACGTCTAAAGATTCGATGTGACGGGAAATCTGAAAAATTTTGCGAAATTTTTGGGGAACTAAACAAGGCCTTA

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