SE2850327

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9332
  • Sorghum bicolor
  • SE2850327
  • PIF/harbinger
  • To46
  • chromosome_5:1900986-1901324
  • TCA
  • GGGGCCGTTTGGATCCTTTCATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TCA      --            ----------      --      ---------A     ATCTA   AATAAATTAGGCTATTTGGCTTGGAATTTGACACTCCACCACTTTCCAAAGTTCAAATATAATCTCAAATTCATATGGTGGGAGATGGAAATTGATTCTATAGATCAACATTCT
   GGGGCC  GTTTGGATCCTT          TCATTT  GGAGGA          TTGAA     CTT                                                                                                                  
   ||||||  ||||||||||||          ||||||  ||||||          |||||     |||                                                                                                                  A
   CTCCGG  CAAACCTAGGAA          AGTAAA  TATTAG          GTGTA     ATT                                                                                                                  
  A      GT            CCTTAACCTA      AT      TATTAAATCT     -----   AATTCGATTATACCAACATACACCTAATATAAACATATAATAACAACCGATATGCTCTCTCTATGGCATCCCCTCGCTCAACTTCTCACACAATATTCAACGTTTCATCTTTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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