SE2850329

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9334
  • Sorghum bicolor
  • SE2850329
  • PIF/harbinger
  • To2
  • chromosome_10:11824-12421
  • TTA
  • AGGCCTTGTT

Secondary structure and sequence

TSD    TIR
5'



3'
TT          -   -        T   ----  --         -----    -    GCTTTTTC    - -- ATTTGACAAATATTATCCAATCATGGACTAACTAGGCTCAAAAGATTTATCTCGTCAATTCCGACCAAACTGTGCAATTAGTTTTTATTTTTGTCTATATTTAGTACTTCATGCATGTGTCTAAAGATTCGATGTGACGAGGAATCTGAAAAATTTTGCAAAATTTTTTGGGAACTAAGGGCCTGTTTAGATTGGGAACGAAAAATTTTTGGGTGTCACATCGGATGTGTCGGAA
  AGGCCTTGTT TAG TTCCAAAA ATT    TT  GCAAAATGG     ACAC TGTA        GTTT G  T                                                                                                                                                                                                                                           
  |||||||||| ||| |||||||| |||    ||  |||||||||     |||| ||||        |||| |  |                                                                                                                                                                                                                                            
  TCCGGAACAA TCC GGACAAAT CAA    TG  TTTTAAAAA     GTAG GTAG        CTTA A  T                                                                                                                                                                                                                                           
AT          A   G        -   AAGG  GA         AGTAG    G    --------    G AA CTGTGTACGTACCTTGTAATTTACATCTATTTTTTTATTTAATTAATGTGTCAAATCAACTCTTAGCGCTCTGCTTAGAAAATTCGGATCAATGAGGTACTAATCGGAATTTACGATGTCATTGGGTGTATACGATTACTGTCTAATTAATACGAATTATTTAAACAGAACGTCAAAGGACTGCTCCATACACTAAATAAAAAAATAATCAAAGATTTTTGGGGAGGGCTGTAGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End