SE2850332

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9337
  • Sorghum bicolor
  • SE2850332
  • PIF/harbinger
  • To13
  • chromosome_6:1496928-1497225
  • TAA
  • AGAGCAACTCCAAGAGCTTGGCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                        TTCTTGTTG     G  ATTTTAGAATTTGCATAGCAAAAAGTAGGCTCCAACAGATGTGCTATCTGGTTTTGTAAAATAGAAAGTTGGCTATCCCTTGATTTTCGGTGGCCATATATAGCCAA
  AGAGCAACTCCAAGAGCTTGGCTA         TGGAG CT                                                                                                           
  ||||||||||||||||||||||||         ||||| ||                                                                                                            
  TCTCGTTGAGGTTCTCGAACCGAT         TCGGT TT                                                                                                           
AA                        -TTTAATCA     -  AAGGTAACAAATCGATAAAAGTTTTTATCTTTTGAAGAATTTTTTTCTTCTTCAGGTGTTGTCGGAACGATAAAATGTTAGTCTATCGGTAATCGGTCACAATCACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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