Plant MITE

SE2830333

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_9338
Sorghum bicolor
SE2830333
hAT
Hat4
chromosome_5:53136052-53136343
GTCTTCAG
AGTAGGGATGAAAACGGTACGGATAT

Secondary structure and sequence

TSD TIR

5'

3'

GTCTTC G               TA       -TTTC    C  ATTCGAGACCGAATTCGTTTAGAGGGGTCCAGATCTGTCCGTATCCGAGTCCGAATATCCAACATCCGATACCGTATCCGTATCCGAATACTTAAATCGTATA
      A TAGGGATGAAAACGG  CGGATAT     CGAC GT                                                                                                       
      | |||||||||||||||  |||||||     |||| ||                                                                                                        
      T ATCCCTACTTTTGCC  GCCTATG     CTAT AG                                                                                                       
GACTTC G               TA       CCTGC    -  TGACTATAGTATAAACAAAAGTATAAAGACCAGCCTAAGCCTAAGCTTATGCCTATTACAGTTAGTACAGCCTATTCTATACTAACCTACAGCTGTAGTATTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2830333

GTCTTCAGTAGGGATGAAAACGGTACGGATATTTTCCGACCGTATTCGAGACCGAATTCGTTTAGAGGGGTCCAGATCTGTCCGTATCCGAGTCCGAATATCCAACATCCGATACCGTATCCGTATCCGAATACTTAAATCGTATATTTATGATGTCGACATCCAATCATATCTTATCCGACATGATTGACATTATCCGTATTCGAATCCGAATCCGACCAGAAATATGAAAACAAATATGATATCAGTGATATCCGTCCGTATCCGATCCGTTTTCATCCCTAGTCTTCAG

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