SE2850334

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9339
  • Sorghum bicolor
  • SE2850334
  • PIF/harbinger
  • To13
  • chromosome_2:75245148-75245437
  • TAA
  • AGAGCAACTCCAACAGCTTAGCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             C     A    --TTCTTA       GGCTATTTTAAATTTTACAGAGTAAAAAGTAGGCTCTAACAAATATGTTGTCTGGTTTTGTAAAATAGAACATTGGCTATTTCTTGATTTTCATTGGTCATATAT
  AGAGCAACTCCAA AGCTT GCTA        TTGTGGA                                                                                                         
  ||||||||||||| ||||| ||||        |||||||                                                                                                          
  TCTCGTTGAGGTT TCGAA CGAT        TCGGTTT                                                                                                         
AA             C     C    TTTAATCA       AAAGTGACAAATCGATAAAATATTTCATCTTTTAAAGAATTTTTTTCTCCAGGTGCTGTCAGAACGATAAAATATTTTAATCTATCGATCACAGTTATCAACCGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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