SE2850338

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9343
  • Sorghum bicolor
  • SE2850338
  • PIF/harbinger
  • To18
  • chromosome_10:22647233-22647479
  • TAA
  • AGGCCTTGTTTAGTTCCCAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA    C                  ------------TTT         AACACTATATCACTTTTGTTTTTATTTGGTAATTATTGTTCAATTATGGACTAACTAGGCTCAAAAGATTCATCTCGTGAT
  AGGC TTGTTTAGTTCCCAAAAA               TTGGTTTTG                                                                                 
  |||| ||||||||||||||||||               |||||||||                                                                                  
  TCCG AACAAATCAAGGGTTTTT               GTTCTAAGG                                                                                 
AA    -                  CATAGGTTTTAAAAA         AGTAGTGTACCTTAGAACGCCGTATACGTATCTCGTAATTTATATCTACTTTTTTTTTGATTAACGTATCATACAGACATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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