SE2850341

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_9346
  • Sorghum bicolor
  • SE2850341
  • PIF/harbinger
  • To47
  • chromosome_1:19501736-19501972
  • TAA
  • AGGCTTTGGTTAGTTTCCAAAATTTTTCAAGATTGTCTGTCACATCAAATCTTGCGGCA

Secondary structure and sequence

TSD    TIR
5'



3'
TA        GT      -  -        -----  AA      CT T   -A  AAA    ---GC    ---------C    ATTAAGCATCAAATATAGATAAAAAGATAGCTAATTGCACAGTT
  AGGCTTTG  TAGTTT CC AAAATTTT     TC  GATTGT  G CAC  TC   TCTT     GGCA          ATGC                                            
  ||||||||  |||||| || ||||||||     ||  ||||||  | |||  ||   ||||     ||||          ||||                                            T
  TCCGGAAC  ATCAAG GG TTTTAAAA     AG  TTGACA  C GTG  AG   AGAA     CCGT          TCAA                                            
AA        AA      C  A        CCCAA  CG      -T -   AA  --C    ATAAA    TAATAATAAG    TATCTGATTGAACCAAATTTTCTAAGCATAGCGTTTAATGTCTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End